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A sequence format defines the permitted layout and content of text in a file. This includes text s that define fields used in a databank. These fields include the sequence itself, the sequence identifier name and accession number, amongst others.
The GDC currently accepts DNA and RNA sequencing data in both FASTQ and BAM formats. Sequencing data is submitted with accompanying metadata in either simple tab-separated values (TSV) or the JavaScript Object Notation JSON format , or the latest version (currently 1.5) of the SRA XML format.
SQT file format The SQT optical format is intended to hold preprocessed optical property data that has been sorted into a Spherical Quad-Tree. Besides the human-readable header, it is exclusively machine generated, binary, may be compressed internally.
PEFF is primarily designed to encode a set of reference protein sequences and the associated collection of annotations on each protein, most commonly in the form of potential PTMs and sequence variants. However, any of the constituent databases can be defined in a PEFF header as being a database comprising proteoforms.
The Heart Failure Association (HFA)-PEFF score is recognized as a simple method to diagnose heart failure (HF) with preserved ejection fraction (HFpEF).
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The HFA‐PEFF score is calculated as the sum of functional, morphological, and laboratory domains. Within each domain, a major criterion scores 2 points and a minor criterion 1 point.
PEFF (PSI Extended Fasta Format) is a proposed unified format for protein and nucleotide sequence databases to be used by sequence search engines and other associated tools.

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