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A perspective from simple exact models - UCSB College of - engineering ucsb

A perspective from simple exact models - UCSB College of - engineering ucsb 2025

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The document reviews the principles of protein folding, stability, and kinetics through simple exact models. It emphasizes that the folding code is primarily encoded in the sequence of polar and nonpolar monomers rather than local interactions. The authors discuss how computer simulations of lattice models reveal that protein folding involves rapid hydrophobic collapse followed by slower rearrangements to achieve native structures. They argue against traditional views that prioritize local interactions in determining protein structure, suggesting instead that nonlocal interactions play a crucial role. The paper also explores implications for designing foldable polymers beyond proteins.

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What are amino acids synthesised from?

All amino acids are synthesized from intermediates in glycolysis, the citric acid cycle, or the pentose phosphate pathway. Nitrogen is provided by glutamate and glutamine. Amino acid synthesis depends on the formation of the appropriate alpha-keto acid, which is then transaminated to form an amino acid.