OmicsViz: Tutorial and usage - metnet vrac iastate 2025

1. Click ‘Get Form’ to open the OmicsViz tutorial document in the editor.
2. Begin by reviewing Section 1 for essential information on getting started with the OmicsViz plugin. Ensure you have Cytoscape installed and the OmicsViz plugin downloaded.
3. Follow Section 1.3 to load the sample data files into the appropriate Cytoscape directory, ensuring they are ready for use in your analysis.
4. Open the relevant Cytoscape session file as outlined in Section 2. This will allow you to visualize expression data effectively.
5. Navigate to the Plugins Menu, select OmicsViz, and fill out necessary fields such as selecting your experiment data file and mapping file as described in Sections 2 and 3.
6. Once all fields are filled correctly, click 'Import' to bring your data into the current network. Review any results that pop up confirming successful importation.
7. Utilize features like 'SelectedNodes' to highlight nodes of interest within your graph for further analysis.

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