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If you paid FICA taxes but believe you should have been exempt from these payments, you may be able to get a refund. First, request a refund from your employer in writing. If your employer cannot refund you, then you can apply for a refund directly with the U.S. governments Internal Revenue Service (IRS).
Then on March 2, 2010 the IRS made an administrative determination that medical residents were exempted from FICA taxes for tax periods ending before April 1, 2005. After April 1, 2005, new IRS regulations went into effect excluding residents from the student exception.
United States, the U.S. Supreme Court held that medical residents are not students under federal tax law, and thus are subject to federal taxes to cover Social Security and Medicare (so-called FICA taxes).
You are entitled to a refund of the excess amount if you overpay your FICA taxes. You might overpay if: You arent subject to these taxes, but they were withheld from your pay. You didnt owe FICA taxes, but you made estimated tax payments.
Employment as a physician, au pair, or summer camp worker. J-1 Scholars, Teachers, Researchers, Trainees and Physicians and other non-students in J-1 status are considered NRA (Non Resident Alien) for tax purposes and exempt from FICA taxes for the first two calendar years of their presence in the USA.

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Non-student U.S. citizens, lawful permanent residents, and resident aliens (as designated by the GLACIER tax compliance system) are subject to FICA taxes on salary and wages earned as an employee.
General Standards: Under safe harbor rules, a wage payment made by the university to an individual who (a) is at least a half-time undergraduate student or at least a half-time graduate or professional student, (b) is not a full time employee, (c) is not a professional employee, and (d) is not a career employee
FICA is not included in federal income taxes. While both these taxes use the gross wages of the employee as the starting point, they are two separate components that are calculated independently. The Medicare and Social Security taxes rarely affect your federal income tax or refunds.

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