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How do I access my TCGA data?

Commonly requested files such as descriptions of somatic mutations or clinical data are open access. Please go to this page: to access all data associated with TCGA tumor specific publications.

What is the purpose of the TCGA?

The Cancer Genome Atlas (TCGA) has helped establish the importance of cancer genomics, transformed our understanding of cancer, and even begun to change how the disease is treated in the clinic. The impact goes even further, docHubing health and science technologies, computational biology, and other research fields.

What is the geo database?

The geodatabase is the native data structure for ArcGIS and is the primary data format used for editing and data management. While ArcGIS works with geographic information in numerous geographic information system (GIS) file formats, it is designed to work with and leverage the capabilities of the geodatabase.

How do I retrieve gene expression from GEO data?

1. Go to simulator tab to access the GEO database. 2. Querying can be made by entering any keywords like disease name or author name or dataset type into the GEO dataset or GEO profile query box or the GEO accession number (if known) can be typed to the accession number query box in the GEO navigation box. Retrieve gene expression data from GEO (Procedure) - Amrita Virtual Lab amrita.edu amrita.edu

What is the TCGA database used for?

The TCGA is a public funded project that aims to catalogue and discover major cancer-causing genome alterations in large cohorts of over 30 human tumours through large-scale genome sequencing and integrated multi-dimensional analyses.

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