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In this tutorial on a simple prime number calculation app, a bug is identified in the code. To aid debugging, the user can access the Lightrun menu by right-clicking to add logs. These logs can display the value of variables or method invocation results and are integrated with various applications like Elastic, Splunk, and Datadog. For a more localized debugging experience, logs can be viewed in the IDE by expanding the agent and accessing the log tool window. The user can enable log piping to see updates in the Lightrun console, where logs can be searched and filtered for easier management, helping to navigate through numerous log entries effectively.