Distribute chart transcript easily

Aug 6th, 2022
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How to distribute chart transcript

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Hello, my name is Marina DiStefano and Im a clinical molecular genetics fellow at Harvard, and a postdoc in the ClinGen Resource. This is part one of a three-part training series on transcript annotation and curation. Part 1 will discuss transcript annotation. This is an outline of the entire series. As I said, in this first part I will cover why transcript curation matters, citing examples from the hearing loss clinical domain. I will also provide an overview of transcript annotation bodies and their differences. Please continue on to part 2 for more discussion on transcript curation resources, and part 3 to hear about a specific transcript curation strategy that we deployed in the hearing loss domain. As many bio-curators already know, gene curation is required for variant curation. If a gene is not associated with disease, the effect of a variant on the gene cannot be determined. This is best represented by the graph on the left here, modified from Daniel MacArthur, with variant-l

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Transcription is the first step in gene expression. It involves copying a genes DNA sequence to make an RNA molecule. Transcription is performed by enzymes called RNA polymerases, which link nucleotides to form an RNA strand (using a DNA strand as a template).
One of the foundational steps in the RNA-seq data analysis is mapping (alignment) of the large sets of sequenced reads to a reference genome. This task presents more challenges than alignment of genomic DNA reads because RNA sequences are often spliced, i.e. derived from the non-contiguous regions of the genome.
Genetic mapping provides a powerful approach to identify genes and biological processes underlying any trait influenced by inheritance, including human diseases.
The transcript-level quantification tool is designed for estimating gene and isoform expression levels from RNA-Seq data. It expects the sequencing reads in FASTQ format (so a prior alignment is not necessary), and it supports both single-end and paired-end data.
Transcription, as related to genomics, is the process of making an RNA copy of a genes DNA sequence. This copy, called messenger RNA (mRNA), carries the genes protein information encoded in DNA.
Thus an important part of basic and applied genomics is to identify and localize these genes in a process known as transcript mapping. When genes are expressed, their sequences are first converted into messenger RNA transcripts, which can be isolated in the form of complementary DNAs (cDNAs).
GRADING Letter Grade:RCCourse has been repeated; original grade B-, C+, C, or C-; graduate student only.RDCourse has been repeated; effective fall 1984, original grade C-, D+, D or D-; prior to fall 1984, original grade D+, D or D-.RFCourse has been repeated; original grade F.RRCourse has been repeated more than once.41 more rows
A sequence spells out the order of every DNA base in the genome, while a map simply identifies a series of landmarks in the genome, it said. Sometimes mapping and sequencing are completely separate processes. For example, its possible to determine the location of a gene to map the gene without sequencing it.

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