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In this video tutorial, the process of integrating chapter files into a main thesis template is explained. The presenter opens a copy of the thesis template, which already has a filled title page, and prepares to import the chapters. A crucial tip is provided for those using EndNote: before importing chapters, users should convert their citations to unformatted citations. This can be done by selecting "Convert citations and bibliography" on the EndNote ribbon and choosing the "Convert to unformatted citations" option. This action removes the reference list and modifies the citations to show as unformatted with curly brackets. After importing the chapters into the document, users are instructed to update the citations accordingly.