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How to combine multiple Excel workbooks with different column headers. Use a blank query, get data from other sources, and select blank query in the query editor. Bring in the source data and go to new query file by right-clicking on the left pane. Paste the folder path with the sales data and click open to see Region 1 and Region 2 files. Click on combine and transform data to merge the files. Power query selects the first file as the sample file for processing each one in a folder. Note that the end query result will depend on the sample file.