Classify transcript easily

Aug 6th, 2022
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How to classify transcript

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Elizabeth demonstrates how to classify focus group transcripts in Mac and Vivo for Mac version 12. She highlights the advantage of not needing to format speakers separately from text, saving time. She uses an example to show how to assign attributes to speakers, such as gender and age group. This feature allows for easy classification of speakers based on demographic characteristics.

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Although there are fewer than 22,000 protein coding genes known in the human genome, they are transcribed into over 140,000 different transcripts (Ensembl release 66 [1]), over 65% of which have protein coding potential and thus may contribute to protein diversity.
The Ensembl automatic annotation system classifies genes and transcripts into biotypes including: protein coding, pseudogene, processed pseudogene, miRNA, rRNA, scRNA, snoRNA, snRNA.
A processed transcript is a noncoding transcript that does not contain an open reading frame (ORF). This type of transcript is annotated by VEGA/Havana.
There are average 3.42 transcripts per gene. In this study, we did not attempt to discover novel alternatively spliced mRNA isoforms and we relied on the transcript annotations released by GTEx (based on GENCODE version 26).
Gene is a genomic sequence that consists of 2 types of regions- sequences that are expressed or encoded as RNA i.e. transcript, called as exons alternating with regions that are not encoded in the RNA/transcript called as introns.
The Ensembl automatic annotation system classifies genes and transcripts into biotypes including: protein coding, pseudogene, processed pseudogene, miRNA, rRNA, scRNA, snoRNA, snRNA.
Gene is a genomic sequence that consists of 2 types of regions- sequences that are expressed or encoded as RNA i.e. transcript, called as exons alternating with regions that are not encoded in the RNA/transcript called as introns.

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