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when working with proteins one cannot get around the technique called protein immunoblot or simply the western blot western blotting is a method to confirm the presence of a specific target protein in a sample before the analytical technique western blood comes into play everything starts with an sds page upon treatment with sds all proteins in a sample are denatured and covered by negative charges the proteins have a similar master charge ratio and travel through the gel to the positively charged anode this allows to separate proteins ing to their molecular weight after staining the polyacrylamide gel protein bands become visible marker proteins as a reference help to determine the molecular weight of proteins in the sample this band here for example contains proteins with a molecular weight of approximately 60 kilodalton however that will not reveal which proteins are present in this sample it could be the protein of interest which has a molecular weight in this range but the band co