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hello everyone today Im going to talk you through on how to identify a binding site present on a protein if you are interested in identifying the binding site of a protein then you are probably interested in performing structural studies such as docking or simulation a quick summarization of protein ligand docking study its a technique that is used to understand or predict the interaction between a ligand and a receptor ligand usually being the substrate or an analog or molecule that undergoes some change the receptor or the natural molecule being the protein also has the enzyme that catalyzes or the converts the ligand into a different product the trading like in docking tools helps you to predict the interaction between the test plug and whatever is alike in that you have and whether these ligands are having any potential to be an inhibitor or as an inducer for this choice of protein or the enzyme for example enzyme called as dihydrofolate reductase is important protein in bacteri