Bind motif in UOF

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How to bind motif in UOF

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we have julia zeitlinger who did her phd in developmental genetics at embl in germany before joining rick youngamp;#39;s lab at mit in 2000 to pioneer genomic technologies in yeast drosophila and mouse since 2007 she has had her own lab at the stowers institute for medical research she is known for discovering widespread paused rna polymerase developing high resolution chip nexus technology and driving insights into the cis regulatory code using genomics and a fun fact about julia is some scientists remember julia most for her acting in theater plays as a phd student so with that i will let her share her work well thank you for having me um so yeah so itamp;#39;s a pleasure to present our recent paper in nature genetics and itamp;#39;s really a collaboration great collaboration with ancil kondarjamp;#39;s lab so itamp;#39;s really interdisciplinary and written for both biologists and computational people but iamp;#39;m going to keep it really simple for today otherwise weamp;#39

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Where do DNA-binding motifs bind to?

These motifs generally use either helices or sheets to bind to the major groove of DNA; this groove, as we have seen, contains sufficient information to distinguish one DNA sequence from any other.

What is the ATP binding motif?

An ATP-binding motif is a 250-residue sequence within an ATP-binding proteins primary structure. The binding motif is associated with a proteins structure and/or function. ATP is a molecule of energy, and can be a coenzyme, involved in a number of biological reactions.

What is a binding motif?

Transcription factor binding motifs (TFBMs) are genomic sequences that specifically bind to transcription factors. The consensus sequence of a TFBM is variable, and there are a number of possible bases at certain positions in the motif, whereas other positions have a fixed base.

What are the motifs for RNA binding proteins?

The RNA-recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain) is the most abundant RNA-binding domain in higher vertebrates (this motif is present in about 0.5%-1% of human genes)3 and is the most extensively studied RNA-binding domain, both in terms of structure and

Where do regulatory proteins bind?

These proteins bind to regions of DNA, called regulatory elements which are located near promoters. The promoter is the region of a gene where RNA polymerase binds to initiate transcription of the DNA to mRNA. After regulatory proteins bind to regulatory elements, the proteins can interact with RNA polymerase.

What is the difference between free and bound motif?

The motifs which cannot be omitted are bound motifs; those which may be omitted without disturbing the whole causal-chronological course of events are free motifs (Thematics 68).

What is a motif in a protein sequence?

A motif is a short conserved sequence pattern associated with distinct functions of a protein or DNA. It is often associated with a distinct structural site performing a particular function. A typical motif, such as a Zn-finger motif, is ten to twenty amino acids long.

What are RNA-binding motifs?

RNA-binding motif (RBM) proteins are a group of loosely related RRM-containing RBPs (Sutherland et al., 2005). Several RBM proteins have been implicated in cardiomyocyte differentiation and myofibrillogenesis. One of the strongest candidates is RBM24.

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