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how to display the ligand binding pocket surface in this example we have one non-converted icm molecule and one converted icm object you see icm here to display the ligand binding pocket you just right click on the ligand which is this molecule here and select pocket receptor pocket you can just choose to display hydrogen bond labels and go okay but in this example iamp;#39;ve chosen the x-ray structure and so you wonamp;#39;t see any hydrogen bonds you just see a generic pocket surface if you want to color the pocket surface by binding property you need to convert your x-ray structure into an icm object to do that right click on the x-ray structure and say convert pdb and then you will get an object called an icm object with icm here to display the binding pocket surface for this second right click once again say pocket receptor pocket and go okay you can see that the meshes or the pocket surfaces are listed in the icm workspace and you can toggle them on and off here
