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Hello again, itamp;#39;s Professor Hendrix and iamp;#39;ve got behind me binding sites for the drosophila transcription factor giant. giant is a regulatory transcription factor that is involved in anterior posterior patterning in the early fruit fly embryo. now iamp;#39;ll tell you later where i got these binding sites but when we look at what the motif looks like itamp;#39;s often represented using these sequence logos as you can see here the height of each character corresponds to essentially how frequently that particular character or nucleotide occurs or more precisely it describes the information content of that position of the motif and in this particular representation right here we have our frequency matrix which i introduced previously as a count matrix itamp;#39;s essentially the same thing we can see that some of these positions have for example 54 occurrences of an A at this position which presumably refers to this particular a right here
